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Oklahoma State University. Biochemistry & Molecular Biology. degree granting institution.

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Cao, Xiaolong, author.

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Causey, Jason L., author.

(1)

Chiang, Colby, author. (orcid)0000-0002-4113-6065

(1)

Clark University. Biochemistry and Molecular Biology. degree granting institution.

(1)

Cornell University. Nutrition. degree granting institution.

(1)

Dartmouth College. Genetics. degree granting institution.

(1)

Deeter, Anthony, author.

(1)

Fu, Kai, author.

(1)

Harding, Taylor Stiver, author.

(1)

Hixson, Kim Kathleen, author. (orcid)0000-0003-3915-7040

(1)

Hsiao, Yun-Hua, author.

(1)

Hughitt, Vincent Keith, author. (orcid)0000-0003-0787-9559

(1)

Lin, Nan, author.

(1)

Liu, Wanlu, author.

(1)

Mbewe-Campbell, Nzali Violet, author.

(1)

Mohaimani, Aurash, author. (orcid)0000-0002-9286-8071

(1)

Murphy, Julianne, author.

(1)

Naderi Yeganeh, Pourya, author.

(1)

Nguyen, Phan, author. (orcid)0000-0001-8002-2979

(1)

Northwestern University. Engineering Sciences and Applied Mathematics. degree granting institution.

(1)

Oreper, Daniel G., author.

(1)

Pokoo, Robert, author.

(1)

Restuhadi, Fajar, author.

(1)

Shu, Le, author.

(1)

The Chinese University of Hong Kong (Hong Kong). Biology. degree granting institution.

(1)

The Ohio State University. Animal Sciences. degree granting institution.

(1)

The University of Akron. Integrated Bioscience. degree granting institution.

(1)

The University of Chicago. Biochemistry and Molecular Biophysics. degree granting institution.

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The University of Manchester (United Kingdom). School of Biological Sciences. degree granting institution.

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The University of North Carolina at Chapel Hill. Bioinformatics and Computational Biology. degree granting institution.

(1)

The University of North Carolina at Charlotte. Computer Science. degree granting institution.

(1)

The University of Texas School of Public Health. Biostatistics. degree granting institution.

(1)

The University of Wisconsin - Milwaukee. Biomedical and Health Informatics. degree granting institution.

(1)

Tien, Matthew, author. (orcid)0000-0002-0006-9644

(1)

University of Arkansas at Little Rock. Bioinformatics. degree granting institution.

(1)

University of California, Los Angeles. Bioengineering 0288. degree granting institution.

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University of California, Los Angeles. Bioinformatics 025F. degree granting institution.

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University of California, Los Angeles. Molec, Cell, & Integ Physiology 0568. degree granting institution.

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University of California, Los Angeles. Molecular Biology. degree granting institution.

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University of Colorado Denver, Anschutz Medical Campus. Clinical Sciences. degree granting institution.

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University of Maryland, College Park. Cell Biology & Molecular Genetics. degree granting institution.

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University of Minnesota. Biological Science. degree granting institution.

(1)

Varn, Frederick S., author.

(1)

Wang, Guanqun, author.

(1)

Washington State University. Molecular Plant Sciences. degree granting institution.

(1)

Washington University in St. Louis. Biology & Biomedical Sciences (Molecular Genetics & Genomics). degree granting institution.

(1)

Zhang, Jibin, author.

(1)

Zhang, Ruoyu, author. (orcid)0000-0001-5672-5527

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Bioinformatics.

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Molecular biology.

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Computer science.

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Animal sciences.

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Cover image for Methods for Inferring Gene Regulatory Networks from Time Series Expression Data

Methods for Inferring Gene Regulatory Networks from Time Series Expression Data

1.

Methods for Inferring Gene Regulatory Networks from Time Series Expression Data

by

Nguyen, Phan, author. (orcid)0000-0001-8002-2979

http://gateway.proquest.com/openurl?url_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:dissertation&res_dat=xri:pqm&rft_dat=xri:pqdiss:13426540

Format:

Excerpt:

Methods for Inferring Gene Regulatory Networks from Time Series Expression Data / Nguyen, Phan

Cover image for The Impact of Structural Variation on Human Gene Expression

The Impact of Structural Variation on Human Gene Expression

2.

The Impact of Structural Variation on Human Gene Expression

by

Chiang, Colby, author. (orcid)0000-0002-4113-6065

http://gateway.proquest.com/openurl?url_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:dissertation&res_dat=xri:pqm&rft_dat=xri:pqdiss:13809874

Format:

Excerpt:

The Impact of Structural Variation on Human Gene Expression / Chiang, Colby, author. (orcid)0000

Cover image for Network-Based Pathway Enrichment Analysis for Biological Inference of High-Throughput Gene Expression Data

Network-Based Pathway Enrichment Analysis for Biological Inference of High-Throughput Gene Expression Data

3.

Network-Based Pathway Enrichment Analysis for Biological Inference of High-Throughput Gene Expression Data

by

Naderi Yeganeh, Pourya, author.

http://gateway.proquest.com/openurl?url_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:dissertation&res_dat=xri:pqm&rft_dat=xri:pqdiss:13861936

Format:

Excerpt:

Network-Based Pathway Enrichment Analysis for Biological Inference of High-Throughput Gene

Cover image for Yeast Transcriptome Data Mining: Application of Cluster Analysis for Studying Gene Expression Data

Yeast Transcriptome Data Mining: Application of Cluster Analysis for Studying Gene Expression Data

4.

Yeast Transcriptome Data Mining: Application of Cluster Analysis for Studying Gene Expression Data

by

Restuhadi, Fajar, author.

http://gateway.proquest.com/openurl?url_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:dissertation&res_dat=xri:pqm&rft_dat=xri:pqdiss:13871062

Format:

Excerpt:

Yeast Transcriptome Data Mining: Application of Cluster Analysis for Studying Gene Expression Data /

Cover image for GEORAC: An RNA-Seq Atlas Constructor for the Gene Expression Omnibus

GEORAC: An RNA-Seq Atlas Constructor for the Gene Expression Omnibus

5.

GEORAC: An RNA-Seq Atlas Constructor for the Gene Expression Omnibus

by

Mohaimani, Aurash, author. (orcid)0000-0002-9286-8071

http://gateway.proquest.com/openurl?url_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:dissertation&res_dat=xri:pqm&rft_dat=xri:pqdiss:10815932

Format:

Excerpt:

GEORAC: An RNA-Seq Atlas Constructor for the Gene Expression Omnibus / Mohaimani, Aurash, author

Cover image for Gene Network Analysis Identifies a Central Posttranscriptional Regulator of Cellular Stress Survival

Gene Network Analysis Identifies a Central Posttranscriptional Regulator of Cellular Stress Survival

6.

Gene Network Analysis Identifies a Central Posttranscriptional Regulator of Cellular Stress Survival

by

Tien, Matthew, author. (orcid)0000-0002-0006-9644

http://gateway.proquest.com/openurl?url_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:dissertation&res_dat=xri:pqm&rft_dat=xri:pqdiss:10790336

Format:

Excerpt:

Gene regulation underlies all functional outputs of a cell. Measuring changes in gene expression

Cover image for Systematic Pan-Cancer Analyses of the Tumor Immune Response

Systematic Pan-Cancer Analyses of the Tumor Immune Response

7.

Systematic Pan-Cancer Analyses of the Tumor Immune Response

by

Varn, Frederick S., author.

http://gateway.proquest.com/openurl?url_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:dissertation&res_dat=xri:pqm&rft_dat=xri:pqdiss:10817074

Format:

Excerpt:

methodology for inferring immune infiltration levels of distinct cellular subsets from patient gene expression

Cover image for Mining and Integrating Epigenomics Big Data to Discover Novel Mechanisms of Gene Regulation

Mining and Integrating Epigenomics Big Data to Discover Novel Mechanisms of Gene Regulation

8.

Mining and Integrating Epigenomics Big Data to Discover Novel Mechanisms of Gene Regulation

by

Fu, Kai, author.

http://gateway.proquest.com/openurl?url_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:dissertation&res_dat=xri:pqm&rft_dat=xri:pqdiss:10825276

Format:

Excerpt:

regulation of gene expression.

Cover image for The Population Genomics of Human microRNA Gene Copy Number Variation

The Population Genomics of Human microRNA Gene Copy Number Variation

9.

The Population Genomics of Human microRNA Gene Copy Number Variation

by

Murphy, Julianne, author.

http://gateway.proquest.com/openurl?url_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:dissertation&res_dat=xri:pqm&rft_dat=xri:pqdiss:10825241

Format:

Excerpt:

direct associations between miRNA CNV, miRNA gene expression, target gene expression, and phenotype.

Cover image for Studying Low Complexity Structures in Bioinformatics Data Analysis of Biological and Biomedical Data

Studying Low Complexity Structures in Bioinformatics Data Analysis of Biological and Biomedical Data

10.

Studying Low Complexity Structures in Bioinformatics Data Analysis of Biological and Biomedical Data

by

Causey, Jason L., author.

http://gateway.proquest.com/openurl?url_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:dissertation&res_dat=xri:pqm&rft_dat=xri:pqdiss:10750808

Format:

Excerpt:

Biological, biomedical, and radiological data tend to be large, complex, and noisy. Gene expression

Cover image for A Comparative Analysis of MicroRNAs in Flaveria Species of C3, C3-C4 Intermediate and C4 Photosynthesis

A Comparative Analysis of MicroRNAs in Flaveria Species of C3, C3-C4 Intermediate and C4 Photosynthesis

11.

A Comparative Analysis of MicroRNAs in Flaveria Species of C3, C3-C4 Intermediate and C4 Photosynthesis

by

Pokoo, Robert, author.

http://gateway.proquest.com/openurl?url_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:dissertation&res_dat=xri:pqm&rft_dat=xri:pqdiss:10276310

Format:

Excerpt:

their target genes at the posttranscriptional level. The miRNA-mediated gene regulation has emerged as

Cover image for Development and Optimization of Tools for Co-expression Network Analyses of Host-pathogen Systems

Development and Optimization of Tools for Co-expression Network Analyses of Host-pathogen Systems

12.

Development and Optimization of Tools for Co-expression Network Analyses of Host-pathogen Systems

by

Hughitt, Vincent Keith, author. (orcid)0000-0003-0787-9559

http://gateway.proquest.com/openurl?url_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:dissertation&res_dat=xri:pqm&rft_dat=xri:pqdiss:10743470

Format:

Excerpt:

-pathogen interactions. While popular techniques such as differential expression and gene set enrichment analysis can

Cover image for Uncovering the Molecular Networks of Metabolic Diseases Using Systems Biology

Uncovering the Molecular Networks of Metabolic Diseases Using Systems Biology

13.

Uncovering the Molecular Networks of Metabolic Diseases Using Systems Biology

by

Shu, Le, author.

http://gateway.proquest.com/openurl?url_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:dissertation&res_dat=xri:pqm&rft_dat=xri:pqdiss:10824318

Format:

Excerpt:

-wide datasets of total cholesterol and fasting glucose. I then applied Mergeomics to identify the shared gene

Cover image for A Web-based Software System Utilizing Consensus Networks to Infer Gene Interactions

A Web-based Software System Utilizing Consensus Networks to Infer Gene Interactions

14.

A Web-based Software System Utilizing Consensus Networks to Infer Gene Interactions

by

Deeter, Anthony, author.

http://gateway.proquest.com/openurl?url_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:dissertation&res_dat=xri:pqm&rft_dat=xri:pqdiss:10891687

Format:

Excerpt:

, processes, and discretizes RNA-Seq gene expression data. This module was used and tested to process lung

Cover image for Network and Multi-Omics Analyses of Arabidopsis Arogenate Dehydratase Knock-Out and Over-Expression Mutants

Network and Multi-Omics Analyses of Arabidopsis Arogenate Dehydratase Knock-Out and Over-Expression Mutants

15.

Network and Multi-Omics Analyses of Arabidopsis Arogenate Dehydratase Knock-Out and Over-Expression Mutants

by

Hixson, Kim Kathleen, author. (orcid)0000-0003-3915-7040

http://gateway.proquest.com/openurl?url_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:dissertation&res_dat=xri:pqm&rft_dat=xri:pqdiss:10785490

Format:

Excerpt:

ADT knock-outs (KOs) and over-expression (OE) lines. By using both KO and OE lines we could provide

Cover image for Computational Methods for Studying Parent-of-Origin Effects Via Reciprocal Mouse Crosses

Computational Methods for Studying Parent-of-Origin Effects Via Reciprocal Mouse Crosses

16.

Computational Methods for Studying Parent-of-Origin Effects Via Reciprocal Mouse Crosses

by

Oreper, Daniel G., author.

http://gateway.proquest.com/openurl?url_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:dissertation&res_dat=xri:pqm&rft_dat=xri:pqdiss:10786775

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Excerpt:

analysis, we detected dozens of POE/diet-by-POE on gene expression, a handful of similar effects on

Cover image for Causal Inference in Time-Course and Heterogeneous Data

Causal Inference in Time-Course and Heterogeneous Data

17.

Causal Inference in Time-Course and Heterogeneous Data

by

Lin, Nan, author.

http://gateway.proquest.com/openurl?url_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:dissertation&res_dat=xri:pqm&rft_dat=xri:pqdiss:10790001

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Excerpt:

following two types of data effectively: 1. the time-course data such as the time-course gene expression

Cover image for Pre-Clinical Strategies to Overcome Drug-Resistant Multiple Myeloma: Predictive Transcriptomics and Targeting the Myeloma Epigenome

Pre-Clinical Strategies to Overcome Drug-Resistant Multiple Myeloma: Predictive Transcriptomics and Targeting the Myeloma Epigenome

18.

Pre-Clinical Strategies to Overcome Drug-Resistant Multiple Myeloma: Predictive Transcriptomics and Targeting the Myeloma Epigenome

by

Harding, Taylor Stiver, author.

http://gateway.proquest.com/openurl?url_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:dissertation&res_dat=xri:pqm&rft_dat=xri:pqdiss:10787455

Format:

Excerpt:

chemosensitivity profile in response to treatment with the four PIs as single-agents. Through gene expression

Cover image for Cellular and Cell-free Mitochondrial DNA Heteroplasmy and Its Medical Significance

Cellular and Cell-free Mitochondrial DNA Heteroplasmy and Its Medical Significance

19.

Cellular and Cell-free Mitochondrial DNA Heteroplasmy and Its Medical Significance

by

Zhang, Ruoyu, author. (orcid)0000-0001-5672-5527

http://gateway.proquest.com/openurl?url_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:dissertation&res_dat=xri:pqm&rft_dat=xri:pqdiss:10812546

Format:

Excerpt:

observed heteroplasmy dynamics could significantly affect certain gene expression levels.

Cover image for Functional Roles of Single Nucleotide Variants in Alternative Splicing

Functional Roles of Single Nucleotide Variants in Alternative Splicing

20.

Functional Roles of Single Nucleotide Variants in Alternative Splicing

by

Hsiao, Yun-Hua, author.

http://gateway.proquest.com/openurl?url_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:dissertation&res_dat=xri:pqm&rft_dat=xri:pqdiss:10829803

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relatively well studied, but their impact on co- and post-transcriptional control of gene expression is less

Cover image for RNA-seq Assisted Gene Modeling and Annotation, Transcriptome Study and Functional Analysis of Stress Responsive Peptides of Manduca sexta

RNA-seq Assisted Gene Modeling and Annotation, Transcriptome Study and Functional Analysis of Stress Responsive Peptides of Manduca sexta

21.

RNA-seq Assisted Gene Modeling and Annotation, Transcriptome Study and Functional Analysis of Stress Responsive Peptides of Manduca sexta

by

Cao, Xiaolong, author.

http://gateway.proquest.com/openurl?url_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:dissertation&res_dat=xri:pqm&rft_dat=xri:pqdiss:10246183

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Excerpt:

associated genes, and analyzed gene expression in different libraries. We found that most genes were

Cover image for Understanding Dilated Cardiomyopathy through the Integration of "Omics" Data and Functional Analyses

Understanding Dilated Cardiomyopathy through the Integration of "Omics" Data and Functional Analyses

22.

Understanding Dilated Cardiomyopathy through the Integration of "Omics" Data and Functional Analyses

by

Mbewe-Campbell, Nzali Violet, author.

http://gateway.proquest.com/openurl?url_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:dissertation&res_dat=xri:pqm&rft_dat=xri:pqdiss:10750721

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Excerpt:

calculating q-values for pairwise differential gene expression; chi-square tests to determine independence

Cover image for Study on the Molecular Regulation of Remobilization of Carbon Reserve from Stems to Grains and the Role of Trehalose-6-phosphate Phosphatase in Seed Germination in Rice

Study on the Molecular Regulation of Remobilization of Carbon Reserve from Stems to Grains and the Role of Trehalose-6-phosphate Phosphatase in Seed Germination in Rice

23.

Study on the Molecular Regulation of Remobilization of Carbon Reserve from Stems to Grains and the Role of Trehalose-6-phosphate Phosphatase in Seed Germination in Rice

by

Wang, Guanqun, author.

http://gateway.proquest.com/openurl?url_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:dissertation&res_dat=xri:pqm&rft_dat=xri:pqdiss:10902205

Format:

Excerpt:

(diniconazole). Both exogenous ABA and diniconazole also inhibited the expression of the OsTPP1 gene in seeds

Cover image for Mechanisms of DNA Methylation Control and Epigenome Engineering

Mechanisms of DNA Methylation Control and Epigenome Engineering

24.

Mechanisms of DNA Methylation Control and Epigenome Engineering

by

Liu, Wanlu, author.

http://gateway.proquest.com/openurl?url_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:dissertation&res_dat=xri:pqm&rft_dat=xri:pqdiss:10825827

Format:

Excerpt:

gene expression. In order to develop site-specific and efficient tools for DNA methylation targeting

Cover image for Identification of Important Cell Cycle Regulators and Novel Genes in Specific Tissues Using Microarray Analysis, Bioinformatics and Molecular Tools

Identification of Important Cell Cycle Regulators and Novel Genes in Specific Tissues Using Microarray Analysis, Bioinformatics and Molecular Tools

25.

Identification of Important Cell Cycle Regulators and Novel Genes in Specific Tissues Using Microarray Analysis, Bioinformatics and Molecular Tools

by

Zhang, Jibin, author.

http://gateway.proquest.com/openurl?url_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:dissertation&res_dat=xri:pqm&rft_dat=xri:pqdiss:10891779

Format:

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adipogenesis based on analyses of Gene Expression Omnibus (GEO) DataSets (GDSs) in the website of the National

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